Table S3.88. Fragment 88 interactions with Arg

Fragment 88
Listed below are the ligands in the PDB that contain the chemical fragment shown on the left and which interact via this fragment with the side chain of a Arg residue via hydrogen bonds.

The PDB codes are hyperlinked to a schematic LIGPLOT diagram in PDBsum.

Ligand Description


  1. Ligand: AD0
Digalacturonic acid
PDB code: 2uvf.


  2. Ligand: GC4
4-deoxy-d-glucuronic acid
PDB code: 1dbo.


  3. Ligand: GNA
2,4-deoxy-4-guanidino-5-n-acetyl-neuraminic acid
PDB code: 2qwe.


  4. Ligand: KDA
(3-deoxy-d-manno-oct-2-ulosonic acid)-2-o-allyl
PDB codes: 1q9t, 2r1w, 2r1x, 3bpc.


  5. Ligand: KDO
3-deoxy-d-manno-oct-2-ulosonic acid
PDB codes: 1q9q, 1q9q, 1q9r, 1q9t, 1q9v, 1q9w, 1q9w, 1q9w, 1q9w, 1q9w, 1q9w, 2r1y, 3dur, 3dus, 3duu, 3dv4.


  6. Ligand: LGU
Alpha-l-guluronate
PDB codes: 2zaa, 2zaa, 2zaa, 2zab, 2zab, 2zab, 2zac.


  7. Ligand: MAV
D-mannuronic acid
PDB code: 1hv6.