Table S2.60. Fragment 60 interactions with Glu

Fragment 60
Listed below are the ligands in the PDB that contain the chemical fragment shown on the left and which interact via this fragment with the side chain of a Glu residue via hydrogen bonds.

The PDB codes are hyperlinked to a schematic LIGPLOT diagram in PDBsum.

Ligand Description


  1. Ligand: NOZ
(2s,3s,4r,5r)-5-(hydroxymethyl)piperidine-2,3,4-triol
PDB code: 2vl4.


  2. Ligand: 9MR
(3r,4r,5r)-3-hydroxy-5-(hydroxymethyl)piperidin-4-yl beta-d-glucopyranoside
PDB code: 2oyk.


  3. Ligand: G93
4-{2-(4-amino-2,5-dihydro-1,2,5-oxadiazol-3-yl)-1-ethyl-7-[(3s)-piperidin-3-ylmethoxy]-1h-
imidazo[4,5-c]pyridin-4-yl}-2-methylbut-3-en-2-ol
PDB code: 3d0e.


  4. Ligand: IFM
5-hydroxymethyl-3,4-dihydroxypiperidine
PDB code: 1ocq.


  5. Ligand: ISX
Glucose beta-1,3-isofagamine
PDB code: 2bvd.


  6. Ligand: NOY
(2r,3s,4r,5r)-5-(hydroxymethyl)piperidine-2,3,4-triol
PDB codes: 2j75, 2v3g, 2vqu.


  7. Ligand: XIF
Piperidine-3,4-diol
PDB codes: 1fh8, 1v0l, 1v0n.