Software

Image analysis software

Imaris

3D/4D visualization and analysis tools: smart cell based segmentation, analysis on a per cell basis and discovery of intracellular relationships, automated tracking, detection of cell division and creation of interactive lineage trees along with statistical tests and a two-way interface for customization in Matlab, Java or Python

FIJI / ImageJ 

Free open-source Java image processing package. Thousands of plugins and macros for performing a wide variety of tasks.

Volocity

Rapid, interactive, high resolution volume rendering of multi-channel 3D and 4D data sets.